🧬 superdarks: Code files : 3-post_query_informatics/7-clusterupdate_branch

• 📄 7-1-sort_sequences_cu.py – Download
• 📄 7-2-mmseqs_linclust_priority_cu.py – Download

📜 Scripts in this folder

• 7-1-sort_sequences_cu.py — Splits a combined FASTA into per-superkingdom files (.archaea.fa, .bacteria.fa, .eukaryota.fa, .other.fa) by parsing the first pipe-delimited field of the header, and writes a <base>.split_report.txt summary.
• 7-2-mmseqs_linclust_priority_cu.py — Builds priority MMseqs2 representatives with linclust + clusterupdate in Archaea → Bacteria → Eukaryota order, using safe DB naming that avoids in-place reuse (requires mmseqs on PATH).

⚠️ Disclaimer

This is research-grade code provided for academic and exploratory purposes only. It is not intended for professional or clinical deployment.