vesicle_triangulator — Example output : ch1

Per-channel intermediates for channel 01 of the example run. These files are the upstream products that feed the joint triangulation in ../mixed/; they are kept next to the final outputs so you can inspect how the ch1 vesicle points were detected before being triangulated against ch2.

📜 Files in this folder

ch1_thresh.png — Binary threshold mask for channel 01: the raw pixel-level result of the ch1 threshold setting. This is what you see in the GUI right after clicking “Threshold Ch1”.
ch1_components.png — Connected-component labeling of ch1_thresh.png: each distinct vesicle is colorized with its own component ID so you can spot-check that neighboring vesicles were correctly split (or not merged).
ch1_points.csv — Point centroids extracted from the components as (x, y) coordinates, one row per vesicle. This is the input to the triangulator — all ch1 vertices in the mesh come from here.
ch1_overlay.png — Centroids from ch1_points.csv drawn on top of the original microscopy image, so you can verify visually that every detected point lands on a real vesicle.